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Bioedit Company bioedit version 7.1.11
Phylogenetic analysis and <t>RdRP</t> <t>protein</t> identities of the two negative-sense RNA viruses with others. ( A ) Maximum likelihood phylogenetic tree based on the RNA-directed RNA polymerase domain was constructed with a bootstrap of 1000. ( B ) Phylogenetic analysis of AINlV1 in family Nyamiviridae ( left ), and identities (%) of amino acid sequences of AINlV1 with other viruses from family Nyamiviridae ( right ). ( C ) Phylogenetic analysis ( left ) and amino acid sequence identities (%) ( right ) of AIClV1 in family Chuviridae .
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Article Title: Genetic Characterization of Two Novel Insect-Infecting Negative-Sense RNA Viruses Identified in a Leaf Beetle, Aulacophora indica

Journal: Insects

doi: 10.3390/insects15080615

Phylogenetic analysis and RdRP protein identities of the two negative-sense RNA viruses with others. ( A ) Maximum likelihood phylogenetic tree based on the RNA-directed RNA polymerase domain was constructed with a bootstrap of 1000. ( B ) Phylogenetic analysis of AINlV1 in family Nyamiviridae ( left ), and identities (%) of amino acid sequences of AINlV1 with other viruses from family Nyamiviridae ( right ). ( C ) Phylogenetic analysis ( left ) and amino acid sequence identities (%) ( right ) of AIClV1 in family Chuviridae .
Figure Legend Snippet: Phylogenetic analysis and RdRP protein identities of the two negative-sense RNA viruses with others. ( A ) Maximum likelihood phylogenetic tree based on the RNA-directed RNA polymerase domain was constructed with a bootstrap of 1000. ( B ) Phylogenetic analysis of AINlV1 in family Nyamiviridae ( left ), and identities (%) of amino acid sequences of AINlV1 with other viruses from family Nyamiviridae ( right ). ( C ) Phylogenetic analysis ( left ) and amino acid sequence identities (%) ( right ) of AIClV1 in family Chuviridae .

Techniques Used: Construct, Sequencing

Related Articles

Construct:

Article Title: Insights Into Comparative Analyses and Phylogenomic Implications of Acer (Sapindaceae) Inferred From Complete Chloroplast Genomes
Article Snippet: BioEdit version 7.1.11 ( ) was used to align sequences with manual refinement and finally generated a total of 184,290 bp alignment length.


Article Title: Genetic Characterization of Two Novel Insect-Infecting Negative-Sense RNA Viruses Identified in a Leaf Beetle, Aulacophora indica
Article Snippet: MegAlign (version 7.1.0) and BioEdit (version 7.1.11) were utilized to compare the RdRP protein sequences of the two newly discovered viruses in our study with those of their corresponding related viruses [ ].

Article Title: Antibody-Dependent Cellular Cytotoxicity (ADCC)-Mediating Antibodies Constrain Neutralizing Antibody Escape Pathway.
Article Snippet: The resulting consensus sequences were then used to generate codon aligned nucleotide and amino acid alignments using MACSE (45) and viewed using Bioedit (Version 7.1.11) (41).

Article Title: Taxonomy and physiology of Pseudoxanthomonas arseniciresistens sp. nov., an arsenate and nitrate-reducing novel gammaproteobacterium from arsenic contaminated groundwater, India
Article Snippet: Nearly complete stretch of 16S rRNA gene was PCR amplified using 27F/1492R primers (Table A in ); individual sequences were edited and assembled by BioEdit version 7.1.11 [ ], subjected to similarity search in NCBI BLAST [ ], RDP II [ ], and against validly described members in the EzBioCloud database ( http://www.ezbiocloud.net/eztaxon ; [ ]).

Article Title: Genetic diversity of Bartonella infection in residential and field rodents in Hebei, China
Article Snippet: The nearly complete 16S rRNA gene was assembled by partially overlapping oligonucleotides using BioEdit version 7.1.11 ( ).

Article Title: The Non-ureogenic Stinging Catfish, Heteropneustes fossilis , Actively Excretes Ammonia With the Help of Na + /K + -ATPase When Exposed to Environmental Ammonia
Article Snippet: The BioEdit version 7.1.11 ( ) software was used to assemble and analyze the sequences obtained.

Article Title: Sequencing and characterization of the macronuclear rDNA minichromosome of the protozoan Tetrahymena pyriformis.
Article Snippet: a College of Fisheries and Life Science, Dalian Ocean University, Dalian 116023, China b Key Laboratory of Aquatic Biodiversity and Conservation, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China c University of Chinese Academy of Sciences, Beijing 100049, China d State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China e CAS Center for Excellence in Animal Evolution and Genetics, Kunming 650223, China

Sequencing:

Article Title: Insights Into Comparative Analyses and Phylogenomic Implications of Acer (Sapindaceae) Inferred From Complete Chloroplast Genomes
Article Snippet: BioEdit version 7.1.11 ( ) was used to align sequences with manual refinement and finally generated a total of 184,290 bp alignment length.


Article Title: Genetic Characterization of Two Novel Insect-Infecting Negative-Sense RNA Viruses Identified in a Leaf Beetle, Aulacophora indica
Article Snippet: MegAlign (version 7.1.0) and BioEdit (version 7.1.11) were utilized to compare the RdRP protein sequences of the two newly discovered viruses in our study with those of their corresponding related viruses [ ].

Article Title: Antibody-Dependent Cellular Cytotoxicity (ADCC)-Mediating Antibodies Constrain Neutralizing Antibody Escape Pathway.
Article Snippet: The resulting consensus sequences were then used to generate codon aligned nucleotide and amino acid alignments using MACSE (45) and viewed using Bioedit (Version 7.1.11) (41).

Article Title: Taxonomy and physiology of Pseudoxanthomonas arseniciresistens sp. nov., an arsenate and nitrate-reducing novel gammaproteobacterium from arsenic contaminated groundwater, India
Article Snippet: Nearly complete stretch of 16S rRNA gene was PCR amplified using 27F/1492R primers (Table A in ); individual sequences were edited and assembled by BioEdit version 7.1.11 [ ], subjected to similarity search in NCBI BLAST [ ], RDP II [ ], and against validly described members in the EzBioCloud database ( http://www.ezbiocloud.net/eztaxon ; [ ]).

Article Title: Genetic diversity of Bartonella infection in residential and field rodents in Hebei, China
Article Snippet: The nearly complete 16S rRNA gene was assembled by partially overlapping oligonucleotides using BioEdit version 7.1.11 ( ).

Article Title: The Non-ureogenic Stinging Catfish, Heteropneustes fossilis , Actively Excretes Ammonia With the Help of Na + /K + -ATPase When Exposed to Environmental Ammonia
Article Snippet: The BioEdit version 7.1.11 ( ) software was used to assemble and analyze the sequences obtained.

Article Title: Sequencing and characterization of the macronuclear rDNA minichromosome of the protozoan Tetrahymena pyriformis.
Article Snippet: a College of Fisheries and Life Science, Dalian Ocean University, Dalian 116023, China b Key Laboratory of Aquatic Biodiversity and Conservation, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China c University of Chinese Academy of Sciences, Beijing 100049, China d State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China e CAS Center for Excellence in Animal Evolution and Genetics, Kunming 650223, China

Polymerase Chain Reaction:

Article Title: Insights Into Comparative Analyses and Phylogenomic Implications of Acer (Sapindaceae) Inferred From Complete Chloroplast Genomes
Article Snippet: BioEdit version 7.1.11 ( ) was used to align sequences with manual refinement and finally generated a total of 184,290 bp alignment length.


Article Title: Genetic Characterization of Two Novel Insect-Infecting Negative-Sense RNA Viruses Identified in a Leaf Beetle, Aulacophora indica
Article Snippet: MegAlign (version 7.1.0) and BioEdit (version 7.1.11) were utilized to compare the RdRP protein sequences of the two newly discovered viruses in our study with those of their corresponding related viruses [ ].

Article Title: Antibody-Dependent Cellular Cytotoxicity (ADCC)-Mediating Antibodies Constrain Neutralizing Antibody Escape Pathway.
Article Snippet: The resulting consensus sequences were then used to generate codon aligned nucleotide and amino acid alignments using MACSE (45) and viewed using Bioedit (Version 7.1.11) (41).

Article Title: Taxonomy and physiology of Pseudoxanthomonas arseniciresistens sp. nov., an arsenate and nitrate-reducing novel gammaproteobacterium from arsenic contaminated groundwater, India
Article Snippet: Nearly complete stretch of 16S rRNA gene was PCR amplified using 27F/1492R primers (Table A in ); individual sequences were edited and assembled by BioEdit version 7.1.11 [ ], subjected to similarity search in NCBI BLAST [ ], RDP II [ ], and against validly described members in the EzBioCloud database ( http://www.ezbiocloud.net/eztaxon ; [ ]).

Article Title: Genetic diversity of Bartonella infection in residential and field rodents in Hebei, China
Article Snippet: The nearly complete 16S rRNA gene was assembled by partially overlapping oligonucleotides using BioEdit version 7.1.11 ( ).

Article Title: The Non-ureogenic Stinging Catfish, Heteropneustes fossilis , Actively Excretes Ammonia With the Help of Na + /K + -ATPase When Exposed to Environmental Ammonia
Article Snippet: The BioEdit version 7.1.11 ( ) software was used to assemble and analyze the sequences obtained.

Article Title: Sequencing and characterization of the macronuclear rDNA minichromosome of the protozoan Tetrahymena pyriformis.
Article Snippet: a College of Fisheries and Life Science, Dalian Ocean University, Dalian 116023, China b Key Laboratory of Aquatic Biodiversity and Conservation, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China c University of Chinese Academy of Sciences, Beijing 100049, China d State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China e CAS Center for Excellence in Animal Evolution and Genetics, Kunming 650223, China

Amplification:

Article Title: Insights Into Comparative Analyses and Phylogenomic Implications of Acer (Sapindaceae) Inferred From Complete Chloroplast Genomes
Article Snippet: BioEdit version 7.1.11 ( ) was used to align sequences with manual refinement and finally generated a total of 184,290 bp alignment length.


Article Title: Genetic Characterization of Two Novel Insect-Infecting Negative-Sense RNA Viruses Identified in a Leaf Beetle, Aulacophora indica
Article Snippet: MegAlign (version 7.1.0) and BioEdit (version 7.1.11) were utilized to compare the RdRP protein sequences of the two newly discovered viruses in our study with those of their corresponding related viruses [ ].

Article Title: Antibody-Dependent Cellular Cytotoxicity (ADCC)-Mediating Antibodies Constrain Neutralizing Antibody Escape Pathway.
Article Snippet: The resulting consensus sequences were then used to generate codon aligned nucleotide and amino acid alignments using MACSE (45) and viewed using Bioedit (Version 7.1.11) (41).

Article Title: Taxonomy and physiology of Pseudoxanthomonas arseniciresistens sp. nov., an arsenate and nitrate-reducing novel gammaproteobacterium from arsenic contaminated groundwater, India
Article Snippet: Nearly complete stretch of 16S rRNA gene was PCR amplified using 27F/1492R primers (Table A in ); individual sequences were edited and assembled by BioEdit version 7.1.11 [ ], subjected to similarity search in NCBI BLAST [ ], RDP II [ ], and against validly described members in the EzBioCloud database ( http://www.ezbiocloud.net/eztaxon ; [ ]).

Article Title: Genetic diversity of Bartonella infection in residential and field rodents in Hebei, China
Article Snippet: The nearly complete 16S rRNA gene was assembled by partially overlapping oligonucleotides using BioEdit version 7.1.11 ( ).

Article Title: The Non-ureogenic Stinging Catfish, Heteropneustes fossilis , Actively Excretes Ammonia With the Help of Na + /K + -ATPase When Exposed to Environmental Ammonia
Article Snippet: The BioEdit version 7.1.11 ( ) software was used to assemble and analyze the sequences obtained.

Article Title: Sequencing and characterization of the macronuclear rDNA minichromosome of the protozoan Tetrahymena pyriformis.
Article Snippet: a College of Fisheries and Life Science, Dalian Ocean University, Dalian 116023, China b Key Laboratory of Aquatic Biodiversity and Conservation, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China c University of Chinese Academy of Sciences, Beijing 100049, China d State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China e CAS Center for Excellence in Animal Evolution and Genetics, Kunming 650223, China



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Phylogenetic analysis and <t>RdRP</t> <t>protein</t> identities of the two negative-sense RNA viruses with others. ( A ) Maximum likelihood phylogenetic tree based on the RNA-directed RNA polymerase domain was constructed with a bootstrap of 1000. ( B ) Phylogenetic analysis of AINlV1 in family Nyamiviridae ( left ), and identities (%) of amino acid sequences of AINlV1 with other viruses from family Nyamiviridae ( right ). ( C ) Phylogenetic analysis ( left ) and amino acid sequence identities (%) ( right ) of AIClV1 in family Chuviridae .
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Phylogenetic analysis and <t>RdRP</t> <t>protein</t> identities of the two negative-sense RNA viruses with others. ( A ) Maximum likelihood phylogenetic tree based on the RNA-directed RNA polymerase domain was constructed with a bootstrap of 1000. ( B ) Phylogenetic analysis of AINlV1 in family Nyamiviridae ( left ), and identities (%) of amino acid sequences of AINlV1 with other viruses from family Nyamiviridae ( right ). ( C ) Phylogenetic analysis ( left ) and amino acid sequence identities (%) ( right ) of AIClV1 in family Chuviridae .
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Phylogenetic analysis and RdRP protein identities of the two negative-sense RNA viruses with others. ( A ) Maximum likelihood phylogenetic tree based on the RNA-directed RNA polymerase domain was constructed with a bootstrap of 1000. ( B ) Phylogenetic analysis of AINlV1 in family Nyamiviridae ( left ), and identities (%) of amino acid sequences of AINlV1 with other viruses from family Nyamiviridae ( right ). ( C ) Phylogenetic analysis ( left ) and amino acid sequence identities (%) ( right ) of AIClV1 in family Chuviridae .

Journal: Insects

Article Title: Genetic Characterization of Two Novel Insect-Infecting Negative-Sense RNA Viruses Identified in a Leaf Beetle, Aulacophora indica

doi: 10.3390/insects15080615

Figure Lengend Snippet: Phylogenetic analysis and RdRP protein identities of the two negative-sense RNA viruses with others. ( A ) Maximum likelihood phylogenetic tree based on the RNA-directed RNA polymerase domain was constructed with a bootstrap of 1000. ( B ) Phylogenetic analysis of AINlV1 in family Nyamiviridae ( left ), and identities (%) of amino acid sequences of AINlV1 with other viruses from family Nyamiviridae ( right ). ( C ) Phylogenetic analysis ( left ) and amino acid sequence identities (%) ( right ) of AIClV1 in family Chuviridae .

Article Snippet: MegAlign (version 7.1.0) and BioEdit (version 7.1.11) were utilized to compare the RdRP protein sequences of the two newly discovered viruses in our study with those of their corresponding related viruses [ ].

Techniques: Construct, Sequencing